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    <div id="content"><h1>Class: Ensembl::Session
  
  
  
</h1>

<dl class="box">
  
    <dt class="r1">Inherits:</dt>
    <dd class="r1">
      <span class="inheritName">Object</span>
      
        <ul class="fullTree">
          <li>Object</li>
          
            <li class="next">Ensembl::Session</li>
          
        </ul>
        <a href="#" class="inheritanceTree">show all</a>
      
      </dd>
    
  
  
    
  
    
  
  
  
    <dt class="r2 last">Defined in:</dt>
    <dd class="r2 last">lib/ensembl.rb</dd>
  
</dl>
<div class="clear"></div>



  <h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
  <ul class="summary">
    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#collection_species-instance_method" title="#collection_species (instance method)">- (Object) <strong>collection_species</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute collection_species.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#coord_system_ids-instance_method" title="#coord_system_ids (instance method)">- (Object) <strong>coord_system_ids</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
map CS id to CS name.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#coord_systems-instance_method" title="#coord_systems (instance method)">- (Object) <strong>coord_systems</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute coord_systems.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#seq_regions-instance_method" title="#seq_regions (instance method)">- (Object) <strong>seq_regions</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute seq_regions.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#seqlevel_coord_system-instance_method" title="#seqlevel_coord_system (instance method)">- (Object) <strong>seqlevel_coord_system</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute seqlevel_coord_system.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#seqlevel_id-instance_method" title="#seqlevel_id (instance method)">- (Object) <strong>seqlevel_id</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute seqlevel_id.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#toplevel_coord_system-instance_method" title="#toplevel_coord_system (instance method)">- (Object) <strong>toplevel_coord_system</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute toplevel_coord_system.
</p>
</div></span>
  
</li>

    
      <li class="public ">
  <span class="summary_signature">
    
      <a href="#toplevel_id-instance_method" title="#toplevel_id (instance method)">- (Object) <strong>toplevel_id</strong> </a>
    

    
  </span>
  
  
    
    
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
Returns the value of attribute toplevel_id.
</p>
</div></span>
  
</li>

    
  </ul>


  
    <h2>
      Instance Method Summary
      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
    </h2>

    <ul class="summary">
      
        <li class="public ">
  <span class="summary_signature">
    
      <a href="#initialize-instance_method" title="#initialize (instance method)">- (Session) <strong>initialize</strong> </a>
    

    
  </span>
  
    <span class="note title constructor">constructor</span>
  
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'><p>
A new instance of Session.
</p>
</div></span>
  
</li>

      
        <li class="public ">
  <span class="summary_signature">
    
      <a href="#reset-instance_method" title="#reset (instance method)">- (Object) <strong>reset</strong> </a>
    

    
  </span>
  
  
  
  
  
  

  
    <span class="summary_desc"><div class='inline'></div></span>
  
</li>

      
    </ul>
  

<div id="constructor_details" class="method_details_list">
  <h2>Constructor Details</h2>
  
    <div class="method_details first">
  <p class="signature first" id="initialize-instance_method">
  
    - (<tt><span class='object_link'><a href="" title="Ensembl::Session (class)">Session</a></span></tt>) <strong>initialize</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
A new instance of Session
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
    <td>
      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 23</span>

<span class='def def kw'>def</span> <span class='initialize identifier id'>initialize</span>
  <span class='@coord_systems ivar id'>@coord_systems</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span> <span class='comment val'># key = id; value = CoordSystem object</span>
  <span class='@coord_system_ids ivar id'>@coord_system_ids</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span> <span class='comment val'># key = id; value = name</span>
  <span class='@seq_regions ivar id'>@seq_regions</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
  
</div>

  <div id="instance_attr_details" class="attr_details">
    <h2>Instance Attribute Details</h2>
    
      
      <span id="collection_species=-instance_method"></span>
      <span id="collection_species-instance_method"></span>
      <div class="method_details first">
  <p class="signature first" id="collection_species-instance_method">
  
    - (<tt>Object</tt>) <strong>collection_species</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute collection_species
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
    <td>
      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 21</span>

<span class='def def kw'>def</span> <span class='collection_species identifier id'>collection_species</span>
  <span class='@collection_species ivar id'>@collection_species</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="coord_system_ids=-instance_method"></span>
      <span id="coord_system_ids-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="coord_system_ids-instance_method">
  
    - (<tt>Object</tt>) <strong>coord_system_ids</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
map CS id to CS name
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
    <td>
      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 19</span>

<span class='def def kw'>def</span> <span class='coord_system_ids identifier id'>coord_system_ids</span>
  <span class='@coord_system_ids ivar id'>@coord_system_ids</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="coord_systems=-instance_method"></span>
      <span id="coord_systems-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="coord_systems-instance_method">
  
    - (<tt>Object</tt>) <strong>coord_systems</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute coord_systems
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
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      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 16</span>

<span class='def def kw'>def</span> <span class='coord_systems identifier id'>coord_systems</span>
  <span class='@coord_systems ivar id'>@coord_systems</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="seq_regions=-instance_method"></span>
      <span id="seq_regions-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="seq_regions-instance_method">
  
    - (<tt>Object</tt>) <strong>seq_regions</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute seq_regions
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
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      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 20</span>

<span class='def def kw'>def</span> <span class='seq_regions identifier id'>seq_regions</span>
  <span class='@seq_regions ivar id'>@seq_regions</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="seqlevel_coord_system=-instance_method"></span>
      <span id="seqlevel_coord_system-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="seqlevel_coord_system-instance_method">
  
    - (<tt>Object</tt>) <strong>seqlevel_coord_system</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute seqlevel_coord_system
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
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      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 17</span>

<span class='def def kw'>def</span> <span class='seqlevel_coord_system identifier id'>seqlevel_coord_system</span>
  <span class='@seqlevel_coord_system ivar id'>@seqlevel_coord_system</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="seqlevel_id=-instance_method"></span>
      <span id="seqlevel_id-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="seqlevel_id-instance_method">
  
    - (<tt>Object</tt>) <strong>seqlevel_id</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute seqlevel_id
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
  <tr>
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      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 17</span>

<span class='def def kw'>def</span> <span class='seqlevel_id identifier id'>seqlevel_id</span>
  <span class='@seqlevel_id ivar id'>@seqlevel_id</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="toplevel_coord_system=-instance_method"></span>
      <span id="toplevel_coord_system-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="toplevel_coord_system-instance_method">
  
    - (<tt>Object</tt>) <strong>toplevel_coord_system</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute toplevel_coord_system
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
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      <pre class="lines">


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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 18</span>

<span class='def def kw'>def</span> <span class='toplevel_coord_system identifier id'>toplevel_coord_system</span>
  <span class='@toplevel_coord_system ivar id'>@toplevel_coord_system</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
      
      <span id="toplevel_id=-instance_method"></span>
      <span id="toplevel_id-instance_method"></span>
      <div class="method_details ">
  <p class="signature " id="toplevel_id-instance_method">
  
    - (<tt>Object</tt>) <strong>toplevel_id</strong> 
  

  
</p><div class="docstring">
  <div class="discussion">
    <p>
Returns the value of attribute toplevel_id
</p>


  </div>
</div>
<div class="tags">
  
</div><table class="source_code">
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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 18</span>

<span class='def def kw'>def</span> <span class='toplevel_id identifier id'>toplevel_id</span>
  <span class='@toplevel_id ivar id'>@toplevel_id</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
  </div>


  <div id="instance_method_details" class="method_details_list">
    <h2>Instance Method Details</h2>
    
    
      <div class="method_details first">
  <p class="signature first" id="reset-instance_method">
  
    - (<tt>Object</tt>) <strong>reset</strong> 
  

  
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    </td>
    <td>
      <pre class="code"><span class="info file"># File 'lib/ensembl.rb', line 29</span>

<span class='def def kw'>def</span> <span class='reset identifier id'>reset</span>
  <span class='@coord_systems ivar id'>@coord_systems</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span>
  <span class='@coord_system_ids ivar id'>@coord_system_ids</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span>
  <span class='@seq_regions ivar id'>@seq_regions</span> <span class='assign token'>=</span> <span class='Hash constant id'>Hash</span><span class='dot token'>.</span><span class='new identifier id'>new</span>
  <span class='@seqlevel_id ivar id'>@seqlevel_id</span> <span class='assign token'>=</span> <span class='nil nil kw'>nil</span>
  <span class='@toplevel_id ivar id'>@toplevel_id</span> <span class='assign token'>=</span> <span class='nil nil kw'>nil</span>
  <span class='@seqlevel_coord_system ivar id'>@seqlevel_coord_system</span> <span class='assign token'>=</span> <span class='nil nil kw'>nil</span>
  <span class='@toplevel_coord_system ivar id'>@toplevel_coord_system</span> <span class='assign token'>=</span> <span class='nil nil kw'>nil</span>
  <span class='@collection_species ivar id'>@collection_species</span> <span class='assign token'>=</span> <span class='nil nil kw'>nil</span>
<span class='end end kw'>end</span>
</pre>
    </td>
  </tr>
</table>
</div>
    
  </div>

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